Concept


Because of the universality of the genetic code, the polymerases of one organism can accurately transcribe a gene from another organism. For example, different species of bacteria obtain antibiotic resistance genes by exchanging small chromosomes called plasmids. In the early 1970s, researchers in California used this type of gene exchange to move a "recombinant" DNA molecule between two different species. By the early 1980s, other scientists adapted the technique and spliced a human gene into E. coli to make recombinant human insulin and growth hormone. Recombinant DNA technology — genetic engineering — has made it possible to gain insight into how genes work. In cases where it is impractical to test gene function using animal models, genes can first be expressed in bacteria or cell cultures. Similarly, the phenotypes of gene mutations and the efficacy of drugs and other agents can be tested using recombinant systems.

Animation


Hello, I’m Stanley Cohen…and I’m Herbert Boyer. In 1972, we were at a biology conference in Hawaii. At the time, I was studying bacterial resistance to antibiotics, and Herbert was studying restriction enzymes. We realized we could work together to recombine genes from different bacteria into one DNA molecule. We used genes from two drug-resistant strains of E. coli bacteria — one gene provides resistance to the antibiotic tetracycline, and the other provides resistance to kanamycin. Each gene is carried on a plasmid in E. coli. Plasmids are small rings of DNA that exist independently of the main bacterial chromosome. They can be replicated and passed on to progeny. I named these plasmids p for plasmid and SC for Stanley Cohen. The plasmid pSC101 carries a gene for tetracycline resistance, and pSC102 carries a gene for kanamycin resistance. We grew the bacterial strains that carried these plasmids, and then we isolated the plasmid DNA. We added the restriction enzyme EcoRI to the plasmid DNA. EcoRI cuts each DNA strand off-center of the recognition site, producing short, single-stranded sequences called "sticky" ends. We mixed the cut plasmids and added DNA ligase. Fragments with EcoRI ends are complementary. This allows fragments to recombine with any other. Hydrogen bonds align two sticky ends, until the ligase repairs the sugar-phosphate bonds to create a stable recombinant molecule. Our objective was to combine the kanr gene and the tetr gene on one plasmid. However, other sorts of molecules were ligated together from the parts. Before we could isolate the recombinant plasmid we wanted, we needed a way to get our ligated plasmids into E. coli. Classic experiments by Oswald Avery and his group showed that Pneumococcus bacteria are "transformed" to virulence when they take up DNA from virulent strains. However, natural transformation is a rare event, so we used a chemical method developed in 1970 by Mandel and Higa at the University of Hawaii. This involved mixing the bacteria and DNA in a suspension of cold calcium chloride at freezing temperature. Then, we rapidly raised and lowered the temperature to create a "heat shock." This technique induces the bacteria to take in plasmid DNA. We spread the transformed bacteria onto a culture plate containing tetracyline and kanamycin. Only transformed bacteria containing both kinds of resistance genes could grow in the presence of both antibiotics. This result was consistent with the bacteria being transformed with a recombined plasmid containing both the tetr and the kanr gene. However, it was also possible that some bacteria had been doubly transformed by religated versions of the original plasmids. Restriction analysis showed that some of the colonies had, indeed, been transformed by a recombinant plasmid. We were able to tell which was which when we cut the plasmids and ran them out on an agarose gel. (Roll over each band to see the difference.) We had made the first recombinant plasmid. Several months later we showed that these same methods could be used to recombine genes from eukaryotic and prokaryotic organisms. We inserted a frog gene into an E. coli plasmid. The resulting bacteria produced frog RNA. Hi, I’m Doug Hanahan. As a graduate student at Harvard, I made the first thorough study of induced transformation of E. coli. Here are my ideas about what happens when bacterial cells are transformed using the Mandel and Higa method. During rapid growth, the cell membrane of E. coli has hundreds of pores, called adhesion zones. The cell membrane itself is made up of lipid molecules that have negatively-charged phosphates. Even though the adhesion zones are physically large enough to admit plasmid DNA, the negatively-charged phosphates on the DNA helix are repelled by those on the lipids. Theoretically, Ca2+ ions from added calcium chloride can complex with the negative charges, creating an electrostatically neutral situation. Also, lowering the temperature congeals the lipid membrane — stabilizing the negatively-charged phosphates and making them easier to shield. Heat shock creates a temperature imbalance on either side of the bacterial membrane, which may set up a current. With the "ionic shield" in place, the DNA is then swept through the adhesion zone. Techniques like transformation and recombinant DNA have created the field of biotechnology. It is now possible to engineer bacteria to make important human proteins like insulin. However, in order to get bacteria to make insulin or any other eukaryotic protein, a number of factors need to be considered. As you learned in Concept 24, genes in eukaryotic animals have introns — sections of noncoding DNA. Bacteria do not have introns in their genes, and so they do not have the biochemical machinery to remove introns. There is also another consideration. Some eukaryotic proteins are processed after translation. For example, insulin is first translated as preproinsulin, which is 108 amino acids long. The first 24 amino acids are the signal sequence that leads preproinsulin out of the cell. As the protein leaves the cell, the signal sequence is cleaved off, leaving proinsulin, which is stored in the pancreas for further processing. Proinsulin folds into a looped structure and disulfide bridges are made between cysteine amino groups spanning the protein. A 33 amino acid stretch is cleaved off leaving the mature insulin protein. Bacteria cannot process preproinsulin into insulin. So, to get bacteria to make usable insulin, a few tricks were used. First, instead of copying the insulin mRNA, DNA was made based on the protein sequence of the two insulin chains — A and B. Then DNA polymerase was used to make the second strand. These are the double-stranded DNA fragments that are inserted into plasmids. Each DNA fragment is inserted into the -galactosidase gene on a plasmid. The plasmids also have the tetracycline resistance gene. The plasmids are then transformed into bacteria. Tetracycline is added to kill off any untransformed bacteria. E. coli normally secrete -galactosidase into their environment. The transformed bacteria are grown, then the -galactosidase and insulin fusion protein is harvested and purified. The -galactosidase part of the protein is cleaved off and discarded. Finally, the two protein chains are mixed together. Under the right conditions, the disulfide bonds form and usable human insulin has been made from bacteria.

Gallery


Stanley Cohen, Stanford University professor.
Stanley Cohen on one of his many hikes.
Stan Cohen on his boat Genesis. Cohen had a boat-naming contest. The winner received a bottle of wine and a cruise on the boat.
Stan Cohen rejected the name "Titanic III" for his boat.
Stan Cohen entertaining a crowd with the 5-string banjo.
Herbert Boyer, cofounder of Genentech, Inc.
Doug Hanahan, 1982, working in his lab at Cold Spring Harbor Laboratory.
1984 picture of Doug Hanahan (R) and Bruce Stillman, current Director of Cold Spring Harbor Laboratory

Audio/Video


Audio Glossary

Transgenic, Vector

Video Interviews

Douglas Hanahan

Doug Hanahan is a professor of biochemistry at UCSF. He refined transformation techniques, and developed the current theories on the mechanisms of DNA uptake.

Clip 1 (0:41)
Improving on the Mandel and Higa method of DNA transformation.

Clip 2 (0:58)
The problem of getting DNA into a bacteria.

Clip 3 (0:49)
How big are those bacterial pores?

Clip 4 (0:52)
Definitions of "cloning."

Clip 5 (0:24)
Size of DNA and transformation efficiencies.

Biography


 

Stan Cohen and Herb Boyer "invented" recombinant DNA technology. Doug Hanahan refined transformation methods for DNA uptake into bacteria.

STANLEY NORMAN COHEN (1935-)

Stan Cohen was born in Perth Amboy, New Jersey. As a child, he was very interested in science, especially in how things worked. He built and assembled telephones, radios, and thought that he might become a physicist.

He eventually changed his mind and decided he would rather be a medical doctor. After graduating from Rutgers College in 1956, Cohen went to the University of Pennsylvania School of Medicine. He finished his medical degree in 1960.

During his residency, Cohen became more and more interested in basic research. While he was at the National Institutes of Health, he made the decision to combine basic research with clinical medicine. This would be similar to today’s more formal M.D./Ph.D. programs. He accepted a position at Stanford University’s medical school in 1968 and began experimenting with plasmids.

Plasmids have clinical importance because of the drug resistance genes they carry. Leslie Shiu, a graduate student in Cohen’s lab, found that adding calcium chloride increases the chances that plasmid DNA would be incorporated by bacteria. Transformed bacteria would then maintain and propagate the plasmid DNA. Cohen saw the implications; this was a natural Xerox machine for DNA. If DNA could be first introduced into plasmids and then transformed into bacteria, then large quantities of DNA could be produced.

Cohen worked on ways of breaking up the plasmids, and isolating usable fragments for cloning. In 1972, at a meeting in Hawaii, Cohen sat in on a talk by Herbert Boyer, who spoke about how a restriction enzyme, EcoRI, generated sticky ends. Later that night, a group including Boyer and Cohen met up at a deli. Boyer and Cohen discussed various ways they could collaborate. Recombinant DNA technology was born on a deli napkin. Cohen and Boyer eventually patented their technique – one of the first biotech patents granted.

Cohen is a Professor of Genetics at Stanford University. He is a member of the National Academy of Sciences, and in 1980, won the Albert Lasker Basic Medical Research Award. He was awarded the National Medal of Science in 1988. He enjoys skiing, hiking, playing the five-string banjo, and sailing on his boat Genesis.

HERBERT W. BOYER (1936-)

Herb Boyer was born in Derry, Pennsylvania. He was a lineman on the varsity football team and was going to be a doctor. After high school, Boyer went to St. Vincent’s College and started with a “pre-med” curriculum.

It didn’t take long for Boyer to realize that being a medical doctor was not what he wanted to do after all. By the time he graduated college in 1958 with a B.S. in biology and chemistry, Boyer had decided on a research career. He did graduate work at the University of Pennsylvania and then post-graduate work at Yale.

In 1966, Boyer accepted an assistant professorship at the University of California, San Francisco. He became interested in the bacteria E. coli, specifically in the restriction enzymes that could be isolated from E. coli. At a conference in Hawaii in the early '70s, Boyer met Stanley Cohen who was working on plasmids – rings of extra chromosomal DNA. The two began a collaboration that eventually led to the creation of the first recombinant DNA.

In 1975, Boyer met Robert Swanson who worked for a venture capital company. Swanson believed in the burgeoning biotech industry and in 1976, Genentech, Inc. was born. Genentech cloned and later developed the method for synthesizing human insulin using recombinant DNA technology. Genentech continues to be one of the biggest biotech companies in the world.

In addition to founding the company and creating the biotech industry, Boyer, along with Cohen, patented the recombinant DNA technique. This is one of the first biopatents granted, and it generated a lot of income for Stanford University, a claimant on the patent.

Boyer is currently professor emeritus at the University of California at San Francisco and an investigator for the Howard Hughes Medical Institute. He is also a member of the Board of Directors at Genentech, Inc. He and Cohen have won numerous awards for their discovery: 1996 Lemelson-MIT Prize for Invention and Innovation, 1993 Swiss Helmut Horten Research Award, and 1980 Albert Lasker Basic Medical Research Award, among others. Boyer is a member of the California Inventors Hall of Fame, the American Academy of Arts and Sciences and the National Academy of Sciences. He is an avid fisherman and enjoys the great outdoors. Boyer is also a pilot and a classic car buff.

DOUGLAS HANAHAN (1951-)

Doug Hanahan was born in Seattle, Washington. His father was a biochemist and Hanahan was exposed to the world of the "scientist" early on. He did not have any special interest in science as a child, but he did go to Massachusetts Institute of Technology and graduated with a degree in physics in 1976.

It was at M.I.T. that he first developed an interest in biology. He took a class taught by Salvatore Luria, which opened his eyes to the power of the genome. Until this class, Hanahan thought that biology was boring and involved memorizing the names of animals. He entered graduate school in the (then) Biochemistry and Molecular Biology department at Harvard University to join the biology revolution.

Although he was a Harvard graduate student, from 1979 to 1984 Hanahan spent his time at Cold Spring Harbor Laboratory (CSHL). Cohen and Boyer's recombinant DNA technology had initiated a series of discussions as to its safety, and there were strict guidelines for working with bacterial strains and recombinant DNA. CSHL was one of the facilities on the East Coast that had the type of containment facilities set up to do recombinant DNA work.

By experimentation, Hanahan was able to improve on the method used to introduce DNA into bacteria. This, and his theories on the mechanism of DNA uptake constituted the bulk of his thesis work.

Hanahan stayed at CSHL as a staff scientist until 1988. He took advantage of the small, intimate community of scientists at CSHL to explore and develop his interest in other areas of biology. Hanahan became particularly interested in oncogenes and how they worked. This is currently his main research interest.

In 1988, Hanahan accepted a position at the University of California, San Francisco where he is currently a Professor in the Department of Biochemistry and Biophysics and Hormone Research Institute.

Hanahan enjoys playing tennis and sailing; both activities that he first took up while at CSHL. He also chases after his toddlers and grows orchids.

Factoid

Links


 

Links

From Corned Beef to Cloning

A personal perspective from Dr. Stanley Cohen and Dr. Herbert Boyer about their recombinant DNA experiments. This is part of the Access Excellence web site.

Biotechnology at 25: The Founders

A 1998 biotech exhibit from the University of California, Berkley library. The site has photos documenting Cohen and Boyer's experiments.

Bibliography

  • Cohen, S.N., Chang, A.C.Y., Boyer, H.W., and Helling, R.B., 1973, Construction of Biologically Functional Bacterial Plasmids In Vitro, Proc. Nat. Acad. Sci., 70: 3240-3244.

  • Micklos, David A., and Freyer, Greg A., 1990, DNA Science: A First Course in Recombinant DNA Technology, Cold Spring Harbor Laboratory Press, New York.

  • Watson, James D., Gilman, Michael, Witkowski, Jan, Zoller, Mark, 1982, Recombinant DNA, 2nd edition, , W. H. Freeman and Company, New York.

  • Watson, James D., 1987, Molecular Biology of the Gene, The Benjamin/Cummings Publishing Company, Inc., Menlo Park, California.

Glossary


Transgenic - An experimentally produced organism in which DNA has been artificially introduced and incorporated into the organism's germ line, usually by injecting the foreign DNA into the nucleus of a fertilized embryo.
Vector - An agent, such as a virus or a small piece of DNA called a plasmid, that carries a modified or foreign gene. When used in gene therapy, a vector delivers the desired gene to a target cell.

Children resemble their parents.
Genes come in pairs.
Genes don't blend.
Some genes are dominant.
Genetic inheritance follows rules.
Genes are real things.
All cells arise from pre-existing cells.
Sex cells have one set of chromosomes; body cells have two.
Specialized chromosomes determine gender.
Chromosomes carry genes.
Genes get shuffled when chromosomes exchange pieces.
Evolution begins with the inheritance of gene variation.
Mendelian laws apply to human beings.
Mendelian genetics cannot fully explain human health and behavior.
DNA and proteins are the molecules of the cell nucleus.
One gene makes one protein.
A gene is made of DNA.
Bacteria and viruses have DNA too.
The DNA molecule is shaped like a twisted ladder.
A half DNA ladder is a template for copying the whole.
RNA is an intermediary between DNA and protein.
DNA words are three letters long.
A gene is a discrete sequence of DNA nucleotides.
The RNA message is sometimes edited.
Some viruses store genetic information in RNA.
RNA was the first genetic molecule.
Mutations are changes in genetic information.
Some types of mutations are automatically repaired.
A chromosome is a package for DNA.
Higher cells incorporate an ancient chromosome.
Some DNA does not encode protein.
Some DNA can jump.
Genes can be turned on and off.
DNA responds to signals from outside the cell.
Different genes are active in different kinds of cells.
Master genes control basic body plans.
Development balances cell growth and death.
A genome is an entire set of genes.
Living things share common genes.
DNA is only the starting point for understanding human biology.
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