Concept


Researchers in France were the first to shed light on how genes are regulated in bacteria. E. coli makes an enzyme called beta-galactosidase that breaks down the milk sugar lactose into galactose and glucose. The gene that makes beta-galactosidase is under the control of a repressor protein. The repressor binds to a stretch of DNA called the operon, blocking RNA polymerase binding and effectively turning off gene transcription. Lactose itself is an inducer. It turns on gene transcription by binding to the repressor and opening up the operon to RNA polymerase. This is an example of negative regulation since a repressor must be removed before a gene can be turned on. Genes in eukaryotes tend to be positively regulated. Once the DNA is made accessible by removing histones, protein activators can bind to promoter sequences — the start site of transcription for eukaryotes — and turn genes on. Eukaryotic genes do not have operons.

Animation


Bonjour, I'm Jacques Monod. And I'm Francois Jacob. While I was working on my Ph.D. thesis in Paris, I became interested in how bacteria grow. Bacteria use enzymes to break large sugars into smaller pieces. For example, the enzyme b-galactosidase (b-gal) breaks lactose into galactose and glucose. Normally, lactose turns on the gene that produces b-gal. In other words, lactose is an inducer. Lactose regulates the b-gal gene through other intermediates. One of these intermediates is coded by the i gene. The i gene produces an inhibitor that keeps the b-gal gene turned off. When lactose is present, it binds to the inhibitor. This prevents the inhibitor from turning off the b-gal gene. Here's how we showed that there is an inhibitor. We first found mutant bacteria that never turn off the b-gal gene. We assumed that these mutants couldn't produce any inhibitor and called them i -. Then we crossed a normal male with the mutant female. Remember, Lederberg’s experiments (Concept 18) showed that males can pass plasmid DNA to females during conjugation. The female mutant also couldn’t produce b-gal; she was b - and i -. The male donated a plasmid with a functioning b-gal (b+) gene to the female. As the b+ gene entered the female, the cell immediately began producing b-gal, because no inhibitor was present. Therefore, wild-type bacteria must produce an inhibitor. Up to this point, we knew that the inhibitor keeps b-gal synthesis turned off until lactose is added. But we didn’t know what the switch was. Here's how we showed that there is an inhibitor. We first found mutant bacteria that never turn off the b-gal gene. We assumed that these mutants couldn't produce any inhibitor and called them i -. Then we crossed a normal male with the mutant female. Remember, Lederberg’s experiments (Concept 18) showed that males can pass plasmid DNA to females during conjugation. The female mutant also couldn’t produce b-gal; she was b - and i -. The male donated a plasmid with a functioning b-gal (b+) gene to the female. As the b+ gene entered the female, the cell immediately began producing b-gal, because no inhibitor was present. Therefore, wild-type bacteria must produce an inhibitor. Up to this point, we knew that the inhibitor keeps b-gal synthesis turned off until lactose is added. But we didn’t know what the switch was. I reasoned that there must be a binding site for the inhibitor on the DNA itself. We called this binding site the OPERATOR. We were able to find bacteria strains with mutated operators (O-). Though they have working inhibitors (i+), they produce b-gal in the absence of lactose. This is because the operator cannot bind the inhibitor. The model of gene regulation that emerged from all this work, and subsequent work by others, is called the lac operon. When lactose is absent, i produces an inhibitor protein that binds to the operator. This blocks RNA polymerase from binding to the site where mRNA transcription starts. When lactose is present, it binds to the inhibitor and prevents the inhibitor from attaching to the operator. This frees the site for RNA polymerase. mRNA is transcribed and b-gal is made. (Any inhibitor already attached to the operator spontaneously detaches and then gets bound by lactose.) The model of gene regulation that emerged from all this work, and subsequent work by others, is called the lac operon. When lactose is absent, i produces an inhibitor protein that binds to the operator. This blocks RNA polymerase from binding to the site where mRNA transcription starts. When lactose is present, it binds to the inhibitor and prevents the inhibitor from attaching to the operator. This frees the site for RNA polymerase. mRNA is transcribed and b-gal is made. (Any inhibitor already attached to the operator spontaneously detaches and then gets bound by lactose.) Two other structural proteins important for lactose metabolism are also regulated by this same system. The genes for these proteins lie immediately downstream of the b-gal gene, and are turned on at the same time. The word "operon" refers to this close arrangement of related genes and their common regulation. This part of the lac operon is a classic example of NEGATIVE regulation, because an inhibitor must be removed from the DNA to turn on the gene. The lac operon is also positively regulated. As well as getting rid of the inhibitor, an activator must also attach to the DNA to turn on b-gal synthesis. This only happens when glucose is absent. The lack of glucose stimulates production of a molecule called cAMP. cAMP then attaches to a protein, the cAMP receptor protein (CRP). The cAMP-CRP complex then binds to the DNA and helps RNA polymerase begin transcription.Thus, the lac operon of bacteria demonstrates both positive and negative regulation. Eukaryotes also use these same principles to regulate genes, but the details are more complex.

Gallery


François Jacob at a Cold Spring Harbor meeting, 1953.
François Jacob, 1985.
Barbara McClintock (L) and Jacques Monod (R) at a Cold Spring Harbor meeting, 1946.
(L-R) Jacques Monod, Peter Lengyel, Walter Gibert, Luigi Gorini at a Cold Spring Harbor Meeting, 1966.

Audio/Video


Audio Glossary

Enzyme, Gene

Video Interviews

Walter Gilbert

Walter Gilbert is the Carl M. Loeb University Professor at Harvard University. In 1980, he won a Nobel Prize in Chemistry for his work on DNA sequencing.

Clip 1 (0:51)
Before Jacob and Monod, people thought the amount of protein in a cell was constant and proteins turned themselves off.

Clip 2 (0:22)
Jacob and Monod discovered that genes control the amount of protein in a cell.

Clip 3 (0:35)
Where did the idea of negative control come from?

Clip 4 (1:06)
How Jacob and Monod showed the existence of the inhibitor (what Gilbert calls the repressor).

Clip 5 (0:37)
Jacob and Monod never identified the inhibitor, but Gilbert found it.

Clip 6 (0:29)
What we know about gene regulation today.

Clip 7 (0:46)
To explain their data, Jacob and Monod had to hypothesize the existence of mRNA.

Biography


 

Jacques Monod and Francois Jacob were the first to discover how genes were turned on and off.

JACQUES LUCIEN MONOD (1910-1976)

Jacques Lucien Monod was born in Paris on February 9, 1910 but he grew up in sunny Cannes, home to the Cannes Film Festival. This may explain why Monod has been described as having an actor's craving for attention.

Monod's father, Lucien, was a portrait artist, and his mother, Charlotte Todd, came from Milwaukee, Wisconsin. As a child, Monod climbed rocks, sailed yachts, hunted for fossils, and dissected cats while learning to read Greek and play the cello. By age 16, he decided to become a biologist to explain how living things work in terms that did not violate the laws of physics.

Monod returned to Paris in 1928 to study natural sciences at the Sorbonne. He was convinced that genetics held the key to explaining life in these terms. He received his degree in 1931 and started pursuing a Ph.D. During this time, Boris Ephrussi took him to Caltech, the epicenter of genetics. In The Eighth Day of Creation, Ephrussi complained, "I brought him to California to study genetics. He made my life miserable."

Though Monod confessed he goofed off in California, he did impress the local residents with his musical abilities. He conducted concerts for American millionaires who tried to hire him for their local orchestra.

Monod ultimately rejected a career in music and returned to Paris to finish his degree. In 1938 he married the archeologist Odette Bruhl and, in 1939, became the father of twin boys. In 1940 he received his Ph.D. and joined the French Resistance.

During the war, Monod was elevated to the chief of staff of operations for the Forces Françaises de l'Interieur. In preparation for the Allied landings, he arranged parachute drops of weapons, railroad bombings, and mail interceptions. He also continued working with bacteria, the little creatures he could manipulate like chemicals.

The work Monod did with bacteria during the war eventually grew into the famous PaJaMo experiment - Arthur Pardee, François Jacob, and Monod's study that showed bacteria make an inhibitor to keep beta-galactosidase production turned off.

By the time the lac operon system was worked out, Monod switched his curiosity to allostery. Monod called the concept - in which an enzyme's active site changes shape when it binds an effector molecule - the second secret of life.

In the latter part of his career, Monod interpreted the findings of molecular biology for the general public in his book, Chance and Necessity, and directed the Institut Pasteur. Monod died on May 31, 1976 of leukemia; his last words were "Je cherche a comprendre" (I am trying to understand.)

FRANCOIS JACOB (1920-)

Francois Jacob grew up in Paris feeling deprived. He wanted a sibling and thought his parents unjustly denied him the accomplice and playmate he was entitled to. He decided to get one for himself but knew they weren't available in stores.

He studiously watched kissing couples after hearing that kissing causes a baby to grow in the mother's stomach. He was convinced that the mother had to bite off a fragment of the father but he never witnessed the bloody process he imagined and he gave up. (Jacob later produced four children with his wife Lise in the normal fashion.)

As a teenager, Jacob describes himself as "a shade backwards with girls." He didn't have much success with the boys either, constantly getting into fights with right-wing bullies who objected to Jacob's Jewish background. He continued fighting though he rarely won. Jacob excelled in school but he resented the compartmentalization of the subjects.

After finishing school, Jacob was attracted to the field of medicine because surgery reminded him of sorcery. The sight of the human body and the religious aspect of the silent operating room transfixed him. Jacob attended medical school until the impending German invasion forced him to flee to England in 1940.

In England, Jacob joined General de Gaulle's army, the Free French. He chose artillery, his family's branch, but was forced to move to the medical corps. Jacob served in North Africa and participated in the invasion of Normandy in 1944.

The shrapnel that pierced his side during the invasion killed his dream of becoming a surgeon. Nevertheless, he finished medical school after being released from the hospital. To complete school, he searched for a quick and easy thesis project. He studied the properties of a new antibiotic, tryothicin, but describes his research technique as "Charlie Chaplin goes to the lab."

Despite his clumsiness and advanced age, Jacob was drawn toward a research career in genetics. Several times Jacob approached Andre Lwoff and his colleague, Jacques Monod, for a fellowship only to be rejected every time. Finally, on Jacob's last attempt, Lwoff was in a good mood and suggested Jacob start work on "the induction of the prophage." Jacob had no idea what this meant but he accepted the project.

Jacob emerged from his first seminar on lactose induction dazed but fascinated. The scientists alternately told jokes and grilled each other with tough questions. "This was not the cold, studious, stiff, slightly sad, slightly boring world one often imagines," he recalled in his autobiography.

After obtaining his doctorate in 1954, Jacob remained in Lwoff's lab and worked on phage. Jacques Monod worked downstairs on bacteria. After Jacob realized that they were actually studying the same thing - repression - Jacob and Monod began their Nobel Prize-winning collaboration, uncovering the switch that turns beta-galactosidase synthesis off and on.

Jacob and Monod's unraveling of the lac operon not only introduced the new concept of regulatory sites on DNA, but also the concept of mRNA. The researchers had to hypothesize the existence of an intermediary molecule between DNA and protein to account for the rapid production of the enzyme's production. Jacob worked with Sydney Brenner during a brief stay in California to verify the hypothesis.

Factoid

Links


 

Links

Controlling a Gene

This site gives an overview of the lac operon and has experiments that test the lac operon system. This is part of the larger Science Project web site, a collaborative effort between students and teachers.

Dr. Francois Jacob -- Quick Time Video

Dr. Jacob talks about his experiments. This video clip is from the Zygote web site at Swarthmore College.

Infection by E. coli

The E. coli has landed! Watch the bacterium that gave us the lac operon attack an intestinal cell! Click on the link "E. coli's Infection Strategy". Brought to you by the folks at Howard Hughes Medical Institute.

Bibliography

Glossary


Enzyme - A protein that encourages a biochemical reaction, usually speeding it up. Organisms could not function if they had no enzymes.
Gene - The functional and physical unit of heredity passed from parent to offpsring. Genes are pieces of DNA, and most genes contain the information for making a specific protein.

Children resemble their parents.
Genes come in pairs.
Genes don't blend.
Some genes are dominant.
Genetic inheritance follows rules.
Genes are real things.
All cells arise from pre-existing cells.
Sex cells have one set of chromosomes; body cells have two.
Specialized chromosomes determine gender.
Chromosomes carry genes.
Genes get shuffled when chromosomes exchange pieces.
Evolution begins with the inheritance of gene variation.
Mendelian laws apply to human beings.
Mendelian genetics cannot fully explain human health and behavior.
DNA and proteins are the molecules of the cell nucleus.
One gene makes one protein.
A gene is made of DNA.
Bacteria and viruses have DNA too.
The DNA molecule is shaped like a twisted ladder.
A half DNA ladder is a template for copying the whole.
RNA is an intermediary between DNA and protein.
DNA words are three letters long.
A gene is a discrete sequence of DNA nucleotides.
The RNA message is sometimes edited.
Some viruses store genetic information in RNA.
RNA was the first genetic molecule.
Mutations are changes in genetic information.
Some types of mutations are automatically repaired.
A chromosome is a package for DNA.
Higher cells incorporate an ancient chromosome.
Some DNA does not encode protein.
Some DNA can jump.
Genes can be moved between species.
DNA responds to signals from outside the cell.
Different genes are active in different kinds of cells.
Master genes control basic body plans.
Development balances cell growth and death.
A genome is an entire set of genes.
Living things share common genes.
DNA is only the starting point for understanding human biology.
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