Concept


Experiments in the 1960s showed that messenger RNA has the ability to store genetic information, while transfer and ribosomal RNA have the ability to translate genetic information into proteins. Experiments performed two decades later showed that some RNAs can even act as an enzyme to self-edit their own genetic code! These results raised two questions: 1) Why does RNA play so many roles in the flow of genetic information. 2) Why bother storing genetic information in DNA, if RNA alone could do the job? RNA has great capability as a genetic molecule, because it once had to carry on hereditary processes on its own. It now seems certain that RNA was the first molecule of heredity, so it evolved all the essential methods for storing and expressing genetic information before DNA came onto the scene. Unfortunately, single-stranded RNA is rather unstable and is easily damaged by enzymes. By essentially doubling the existing RNA molecule, DNA evolved as a much more stable form to pass genetic information with accuracy from generation to generation.

Animation


Hi, I'm Stanley Miller. As a graduate student in the 50s, I worked with Harold Urey on a very basic problem — the origins of life. Billions of years ago, Earth was an inhospitable place. There were plenty of volcanic eruptions, acid rain, little or no breathable oxygen, and no ozone layer to protect against ultraviolet rays. Our best guess was that the atmosphere contained ammonia, methane, carbon dioxide, and hydrogen gases, very much like Jupiter's atmosphere. Roll over chemical representations to see gases. In the early 50's, Urey and I designed a system that simulated the pre-life, pre-biotic, conditions on Earth. This is a recirculating system. The gases are in the upper chamber, the "atmosphere," and can condense and dissolve in the water in the lower chamber, the "ocean." Then products can recondense out of the lower chamber, and reenter the upper chamber in gaseous form. The gases in the upper chamber get hit by electric discharges, like lightning in the early Earth's atmosphere. This provides the energy for any possible chemical reactions. Later, energy in the form of UV radiation or heat were used and found to be just as effective in similar experiments. Within hours of circulation, simple organic molecules like hydrogen cyanide, formaldehyde, and acetaldehyde were found in the atmospheric chamber. These molecules accumulated in the lower oceanic chamber and interacted to make a number of amino acids, and other organic acids. Eventually, we also found nucleotides, sugars, and other organic molecules in the mix. Basically, all the building blocks of life can be made in this chamber apparatus. Amino acids can join to form longer chains. Nucleotides can also bond and form longer chains. I'm Tom Cech. Miller and Urey's experiments show that organic molecules can be made in the pre-life conditions of Earth. But it's a long way from molecules bumping into each other to form short chains to the long chain molecules that carry hereditary information. RNA was very likely the first molecule to be able to replicate itself. In the primordial soup, a single-stranded RNA molecule could be a template. Single nucleotides could base pair to the template, and then bind to form longer RNA molecules. The process can be repeated and a copy of the original RNA molecule is made. The RNA has replicated. I isolated a specific type of RNA from Tetrahymena thermophila, a single-celled protozoan. This RNA is the precursor of one of the ribosomal RNAs and has a 400 base-pair intron that must be spliced out. Much to my surprise, the RNA spliced itself, with no help from any proteins. The only necessary ingredient is the nucleotide guanine with a free 3' hydroxyl group. I radiolabeled the guanine, and was able to track the reaction. The free 3' hydroxyl group of guanine "attacks" and links to the 5' end of the intron. The 3' hydroxyl group of exon A then links to the 5' end of exon B. This splices out the intron. The transfer of hydroxyl groups seems to be simultaneous with no net loss or gain of metabolic energy. RNA acts as its own catalyst. By studying the ribonuclease of E. coli, my colleague Sidney Altman also showed a catalytic function for RNA. The two of us shared the 1989 Nobel Prize for Chemistry for our work. Our discoveries changed the central dogma. RNA is not just the transmitter of genetic information, RNA can also act as enzymes. These are now called ribozymes.

Gallery


Harold Urey lecturing to a class in the '50s. It was at a lecture like this that Stanley Miller first heard about the idea of synthesizing organic molecules in a pre-biotic world.
Harold Urey examining results, 1950.
Apparatus used by Stanley Miller in the synthesis of organic molecules.
Stanley Miller, 1997.
Thomas Cech, 1998. Cech became president of the Howard Hughes Medical Institute on January 1, 2000.
Sidney Altmann, 1989.

Audio/Video


Audio Glossary

Amino acids, Deoxyribonucleic acid (DNA), Double helix, Messenger RNA (mRNA), Ribonucleic acid (RNA)

Video Interviews

Raymond Gesteland

Ray Gesteland is a Distinguished Professor of Human Genetics in the Department of Human Genetics at the Eccles Institute, University of Utah. His research is on RNA, specifically secondary structures in RNA that can provide additional coding information.

Clip 1 (0:59)
RNA function -- the code within the code.

Clip 2 (1:08)
Why DNA was probably not the driving force of molecular evolution in a pre-biotic environment.

Clip 3 (0:26)
RNA "instability."

Clip 4 (1:20)
Differences between DNA and RNA and the evolutionary roles carried out by each molecule.

Clip 5 (0:54)
The pre-biotic soup of life and the need to increase molecular concentrations.

Biography


 

Stanley Miller and Harold Urey demonstrated that organic molecules can be synthesized under prebiotic conditions. Thomas Cech and Sidney Altman discovered that RNA can have enzymatic activities. For this discovery, they shared the 1989 Nobel Prize for Chemistry.

STANLEY LLOYD MILLER (1930-)

Stanley Miller was born in Oakland, California. According to Miller, a scientific career was an easy choice to make since he grew up in the era of scientific discoveries.

Miller graduated from the University of California at Berkeley in 1951 with a Bachelor of Science in chemistry. He then went to the University of Chicago to do graduate work. He attended a seminar Harold Urey gave on the origins of the solar system. Urey presented the idea of organic molecules being synthesized in a primitive Earth atmosphere. When Miller was looking for a thesis project, he remembered this idea and approached Urey. Initially reluctant to put a graduate student on such a risky project, Urey agreed to a six-month trial. Miller designed an apparatus and used it to simulate the conditions on Earth before life appeared. Once the conditions were worked out, Miller quickly got results and synthesized many of the simple organic molecules necessary for life. Miller published his results in Science in 1953; his name was the only one on the paper. Urey did not want his name on the paper as he felt that Miller did all the work.

After graduating in 1954, Miller did a post-doc at the California Institute of Technology. From 1955-1960 he was an assistant professor in the Department of Biochemistry at Columbia University. He then accepted a position in the Department of Chemistry at the University of California, San Diego where he is now a full professor. He has co-authored a book, The Origin of Life on Earth. His research interests focus on pre-biotic synthesis of nucleotides as well as alternative backbones to ribose phosphate in the first genetic material of the pre-RNA world.

THOMAS ROBERT CECH (1947-)

Thomas (Tom) Cech was born in Chicago and grew up in Iowa City. His father was an M.D. and his mother was a homemaker. As a child, Cech collected rocks and minerals and would "talk" science with his father and professors at the University of Iowa. Throughout high school, Cech was more interested in academics than sports.

In 1966, Cech went to Grinnell College to study chemistry - a subject he really enjoyed. College was a real eye-opener as he met others who were just as excited about academics as he was. He would have stayed in chemistry, but as an undergraduate, Cech worked at Argonne National Laboratory and at Lawrence Berkeley Laboratory. These research experiences made him realize that it just took too long to gather meaningful data for a chemistry experiment.

In 1970, Cech headed for the University of California at Berkeley for graduate work. Here he discovered the world of molecular biology. As he says, he "was thrilled with the much more rapid interplay between idea and experimental test that was possible in this field," and he "became committed to the interface between molecular biology and chemistry." Cech finished his Ph.D. thesis on DNA chromosome structure and then went to the Massachusetts Institute of Technology for post doctoral work.

In 1978, Cech accepted a position in the Department of Biochemistry at the University of Colorado, Boulder. It was here that he and his research group did the work leading to the discovery that RNA can self-splice and thus can act as a ribozyme. For this discovery, Cech shared the 1989 Nobel Prize for Chemistry with Sidney Altman.

In 1988, Cech became an Investigator for the Howard Hughes Medical Institute and in 2000, assumed duties as the President of the Howard Hughes Medical Institute. Among his many honors and awards, Cech received the 1995 National Medal of Science.

Cech enjoys spending time with his family and outdoor activities like running and skiing. He also likes to cook - still a chemist at heart.

Factoid

Links


 

Links

The Double Life of RNA

This site has video clips from Dr. Thomas Cech's 1995 lecture about RNA given at the Howard Hughes Medical Institute.

Cosmic Ancestry

This site has articles, references, and theories relating to the origin of life and whether life could have come to Earth from outer space. There is an updated What's New page with interesting science facts.

Scientists Debate RNA's Role at the Beginning of Life on Earth

This 1997 story was published in The Scientist. It introduces most of the scientists currently working in the field of RNA as the first genetic molecule.

The Genetics of Human Evolution

An interview with Alan Weiner and Nancy Maisels. Both are molecular biologists at Yale University with an interest in the origins of life. The interview is posted on the DNA Files, a web site from the National Public Radio.

An Interview with Dr. Stanley Miller

A 1996 interview with Dr. Stanley Miller about exobiology. Posted on the Access Excellence site.

Bibliography

  • Alberts, Bruce et al., 1983, Molecular Biology of the Cell, Garland Publishing Inc., New York.

  • Calvin, Melvin, 1969, Chemical Evolution: Molecular Evolution Towards the Origin of Living Systems on Earth and Elsewhere, Oxford University Press, New York.

  • Dunn, L.C., 1991, A Short History of Genetics: The Development of Some of the Main Lines of Thought: 1864-1939, Iowa State University Press, Ames.

  • Judson, Horace Freeland, 1979, The Eighth Day of Creation: Makers of the Revolution in Biology, Simon and Schuster, New York.

  • Lagerkvist, Ulf, 1998, DNA Pioneers and Their Legacy, Yale University Press, New Haven.

  • Miller, Stanley L., and Orgel, Leslie E., 1974, The Origins of Life on the Earth, Prentice-Hall, Inc., New Jersey.

  • Miller, Stanley L., 1974, "The First Laboratory Synthesis of Organic Compounds under Primitive Earth Conditions," published in: The Heritage of Copernicus: Theories "Pleasing to the Mind,", pp. 228-242, ed., J. Neyman, MIT Press, Cambridge, MA.

  • Rosenfield, Israel, Ziff, Edward, and Van Loon, Borin, 1983, DNA for Beginners, Writers and Readers Publishing, Inc., London.

  • Thomas, Shirley, Men of Space: Life in Space. Chilton Books, Philadephia.

  • Watson, James D., Gilman, Michael, Witkowski, Jan, Zoller, Mark, 1982, Recombinant DNA, 2nd edition, W. H. Freeman and Company, New York.

  • Woese, Carl R., 1967, The Genetic Code: The Molecular Basis for Genetic Expression, Harper & Row, New York.

Glossary


Amino acids - A group of 20 different kinds of small molecules that link together in long chains to form proteins. Often referred to as the "building blocks" of proteins.
Deoxyribonucleic acid (DNA) -
Double helix - The structural arrangement of DNA, which looks something like an immensely long ladder twisted into a helix, or coil. The sides of the "ladder" are formed by a backbone of sugar and phosphate molecules, and the "rungs" consist of nucleotide bases joined weakly in the middle by hydrogen bonds.
Messenger RNA (mRNA) -
Ribonucleic acid (RNA) -

Children resemble their parents.
Genes come in pairs.
Genes don't blend.
Some genes are dominant.
Genetic inheritance follows rules.
Genes are real things.
All cells arise from pre-existing cells.
Sex cells have one set of chromosomes; body cells have two.
Specialized chromosomes determine gender.
Chromosomes carry genes.
Genes get shuffled when chromosomes exchange pieces.
Evolution begins with the inheritance of gene variation.
Mendelian laws apply to human beings.
Mendelian genetics cannot fully explain human health and behavior.
DNA and proteins are the molecules of the cell nucleus.
One gene makes one protein.
A gene is made of DNA.
Bacteria and viruses have DNA too.
The DNA molecule is shaped like a twisted ladder.
A half DNA ladder is a template for copying the whole.
RNA is an intermediary between DNA and protein.
DNA words are three letters long.
A gene is a discrete sequence of DNA nucleotides.
The RNA message is sometimes edited.
Some viruses store genetic information in RNA.
Mutations are changes in genetic information.
Some types of mutations are automatically repaired.
A chromosome is a package for DNA.
Higher cells incorporate an ancient chromosome.
Some DNA does not encode protein.
Some DNA can jump.
Genes can be turned on and off.
Genes can be moved between species.
DNA responds to signals from outside the cell.
Different genes are active in different kinds of cells.
Master genes control basic body plans.
Development balances cell growth and death.
A genome is an entire set of genes.
Living things share common genes.
DNA is only the starting point for understanding human biology.
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